PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G33400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 164aa    MW: 17757.9 Da    PI: 6.5182
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G33400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB183.22.1e-5718114197
            NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                      vreqdrflPian+srimkk++Pan+ki+kdaket+qecvsefisfvtseasdkcq+ekrkting+dll+a++tlGfe+yv+plk+yl+kyre+e
  OMERI01G33400.1  18 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREME 111
                      69******************************************************************************************** PP

            NF-YB  95 gek 97 
                      g++
  OMERI01G33400.1 112 GDS 114
                      *97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.1E-5416122IPR009072Histone-fold
SuperFamilySSF471132.4E-4021118IPR009072Histone-fold
PfamPF008083.1E-282488IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.2E-225270No hitNo description
PROSITE patternPS0068505571IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.2E-227189No hitNo description
PRINTSPR006152.2E-2290108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MADAGHDESG SPPRSGGVRE QDRFLPIANI SRIMKKAVPA NGKIAKDAKE TLQECVSEFI  60
SFVTSEASDK CQKEKRKTIN GEDLLFAMGT LGFEEYVDPL KIYLHKYREM EGDSKLSSKA  120
GDGSVKKDTI GPHSGASSSS AQGMVGAYTQ GMGYMQPQYH NGDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_B3e-4918109192Transcription factor HapC (Eurofung)
4g91_B3e-4918109192Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0954380.0AB095438.1 Oryza sativa Japonica Group OsHAP3A mRNA for HAP3, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611523.11e-120PREDICTED: nuclear transcription factor Y subunit B-2 isoform X2
SwissprotQ5QMG31e-119NFYB2_ORYSJ; Nuclear transcription factor Y subunit B-2
TrEMBLA0A0E0C9Y31e-120A0A0E0C9Y3_9ORYZ; Uncharacterized protein
STRINGORGLA01G0297200.11e-113(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.13e-69nuclear factor Y, subunit B10